High Diversity Research Articles

WGS of intrauterine E. coli from cows with early postpartum uterine infection reveals a non-uterine specific genotype and virulence factors.

Escherichia coli has been attributed to playing a major role in a cascade of events that affect the prevalence and severity of uterine disease in cattle. The objectives of this project were to (i) define the association between the prevalence of specific antimicrobial resistance and virulence factor genes in E. coli with the clinical status related to uterine infection, (ii) identify the genetic relationship between E. coli isolates from cows with diarrhea, with mastitis, and with and without metritis, and (iii) determine the association between the phenotypic and genotypic antimicrobial resistance identified on the E. coli isolated from postpartum cattle. Bacterial isolates (n = 148) were obtained from a larger cross-sectional study. Cows were categorized into one of three clinical groups before enrollment: metritis, cows with purulent discharge, and control cows. For genomic comparison, public genomes (n = 130) from cows with diarrhea, mastitis, and metritis were included in a genome-wide association study, to evaluate differences between the drug classes or the virulence factor category among clinical groups. A distinct E. coli genotype associated with metritis could not be identified. Instead, a high genetic diversity among the isolates from uterine sources was present. A virulence factor previously associated with metritis (fimH) using PCR was not associated with metritis. There was moderate accuracy for whole-genome sequencing to predict phenotypic resistance, which varied depending on the antimicrobial tested. Findings from this study contradict the traditional pathotype classification and the unique intrauterine E. coli genotype associated with metritis in dairy cows.IMPORTANCEMetritis is a common infectious disease in dairy cattle and the second most common reason for treating a cow with antimicrobials. The pathophysiology of the disease is complex and is not completely understood. Specific endometrial pathogenic Escherichia coli have been reported to be adapted to the endometrium and sometimes lead to uterine disease. Unfortunately, the specific genomic details of the endometrial-adapted isolates have not been investigated using enough genomes to represent the genomic diversity of this organism to identify specific virulence genes that are consistently associated with disease development and severity. Results from this study provide key microbial ecological advances by elucidating and challenging accepted concepts for the role of Intrauterine E. coli in metritis in dairy cattle, especially contradicting the existence of a unique intrauterine E. coli genotype associated with metritis in dairy cows, which was not found in our study.

Dine and dash: how trophic ecology and migration shape functional locomotory traits in clupeiform fishes

Abstract Understanding how interactions between multiple selective forces influence traits at the macroevolutionary scale is key to understanding adaptive landscapes. Diadromy, an extreme form of migration between marine and freshwater environments, is thought to require locomotory traits conducive to long-distance migration. Yet, other selective forces, such as predator avoidance, habitat use, and prey acquisition, are also likely to shape locomotory adaptation in fishes. We examined how diadromy and trophic ecology together influenced locomotory trait diversity across Clupeiformes, a clade of fishes containing high trophic diversity and numerous transitions to diadromy. We found that both diadromy and trophic ecology influenced the pattern and pace of trait evolution. Diadromous taxa rapidly evolved traits characterized by high cruising efficiency, but the extent to which diadromous and non-diadromous taxa differed depended on their trophic ecology. Macropredators showed greater differences in locomotory traits between diadromous and non-diadromous taxa than phytodetritivores and micropredators, suggesting that traits conducive to migration might be most costly to consumers of evasive prey. This work shows that simultaneously characterizing the roles of multiple ecological or life-history factors in phenotypic evolution can bring the topography of adaptive landscapes into sharper focus and provide a more holistic view of the forces driving patterns of trait evolution.

Intra- and interspecies variation and population dynamics of Fasciola gigantica among ruminants in Sudan.

Fasciola gigantica is a widespread parasite that causes neglected disease in livestock worldwide. Its high transmissibility and dispersion are attributed to its ability to infect intermediate snail hosts and adapt to various mammalian definitive hosts. This study investigated the variation and population dynamics of F. gigantica in cattle, sheep, and goats from three states in Sudan. Mitochondrial cytochrome c oxidase subunit I (COI) and NADH dehydrogenase subunit 1 (ND1) genes were sequenced successfully to examine intra and interspecific differences. ND1 exhibited higher diversity than COI, with 15 haplotypes and 10 haplotypes, respectively. Both genes had high haplotype diversity but low nucleotide diversity, with 21 and 11 polymorphic sites for ND1 and COI, respectively. Mismatch distribution analysis and neutrality tests revealed that F. gigantica from different host species was in a state of population expansion. Maximum likelihood phylogenetic trees and median networks revealed that F. gigantica in Sudan and other African countries had host-specific and country-specific lineages for both genes. The study also indicated that F. gigantica-infected small ruminants were evolutionarily distant, suggesting deep and historical interspecies adaptation.

Anthropogenic disturbance produces divergent effects in the community structure and composition of tropical semi-evergreen forests in the Eastern Himalaya

Studies documenting anthropogenic disturbance-driven changes in forest communities of the Eastern Himalaya, a global biodiversity hot spot, are largely lacking. We studied six forest sites of tropical semi-evergreen forests in Arunachal Pradesh in the Eastern Himalaya to understand the effects of varying disturbance intensities on the forest community structure and composition. Based on the magnitude of disturbance, forest sites were classified as experiencing low, moderate and high disturbance. Mean species richness (SR) of trees and shrubs decreased from low disturbance to high disturbance. Mean SR of herbs was maximum in moderately disturbed forest sites. Maximum values of the Shannon-Wiener Diversity Index (SD) were recorded for trees at sites with low disturbance, for shrubs at sites with high disturbance and for herbs in moderately disturbed forests. Pilelou Evenness Index (EI) values were maximum for trees at sites with high disturbance, while maximum EI values for shrubs and herbs were recorded in the forest sites with low disturbance. The number of tree families decreased from 18 to 13 in the forests with low and high disturbance, respectively. Moderate disturbance led to increased herb species richness and diversity, while increasing disturbance produced contrasting effects on trees. High anthropogenic disturbance led to low species richness, but high diversity amongst shrubs. Our investigations suggest that the magnitude of disturbance elicits differential responses in different physiognomic classes in the forest ecosystems and further our understanding of the effects of disturbance in tropical forest ecosystems of a global biodiversity hotspot.

Microbial community structure of plant-based meat alternatives

A reduction in animal-based diets has driven market demand for alternative meat products, currently raising a new generation of plant-based meat alternatives (PBMAs). It remains unclear whether these substitutes are a short-lived trend or become established in the long term. Over the last few years, the trend of increasing sales and diversifying product range has continued, but publication activities in this field are currently limited mainly to market research and food technology topics. As their popularity increases, questions emerge about the safety and nutritional risks of these novel products. Even though all the examined products must be heated before consumption, consumers lack experience with this type of product and thus further research into product safety, is desirable. To consider these issues, we examined 32 PBMAs from Austrian supermarkets. Based on 16S rRNA gene amplicon sequencing, the majority of the products were dominated by lactic acid bacteria (either Leuconostoc or Latilactobacillus), and generally had low alpha diversity. Pseudomonadota (like Pseudomonas and Shewanella) dominated the other part of the products. In addition to LABs, a high diversity of different Bacillus, but also some Enterobacteriaceae and potentially pathogenic species were isolated with the culturing approach. We assume that especially the dominance of heterofermentative LABs has high relevance for the product stability and quality with the potential to increase shelf life of the products. The number of isolated Enterobacteriaceae and potential pathogens were low, but they still demonstrated that these products are suitable for their presence.

Examining the impact of board gender diversity and regional differentiation in the ESG‐corporate performance nexus: Evidence from financial service industry

AbstractThis study explores the impact of environmental, social, and governance (ESG) factors on corporations by investigating how board gender diversity moderates the relationship between ESG practices and corporate performance across different regions. Using traditional data envelopment analysis (DEA) and chance‐constrained DEA models, the study analyzes 225 financial service firms over an 11‐year period (2011–2021). Results indicate that high (low) board gender diversity levels significantly influence the connection between the environmental (social) aspects of ESG practices and corporate performance. Thus, the roles of stakeholder engagement and regional distinctions are highlighted in achieving sustainable development goals.

Molecular evolution of transcription factors AF4/FMR2 family member (AFF) gene family and the role of lamprey AFF3 in cell proliferation.

AF4/FMR2 family member (AFF) proteins are a group of transcriptional regulators that can regulate gene transcription and play an important role in cellular physiological processes such as proliferation and differentiation. The transcriptome data of the lamprey spinal cord injury were analyzed in previous research. We then identified a hub gene, Lr-AFF3, from this dataset. Phylogenetic tree analysis determined the evolutionary relationships of the AFF gene family across different species. In addition, analysis of motifs, domains, and 3D structures further confirmed the conservatism of the AFF gene family. In particular, the gene structure of the AFF3 gene was not conserved, possibly because of intron insertion. It was also found that the neighboring genes of the Lr-AFF3 gene had a higher diversity than that in jawed vertebrates through synteny analysis. The results of the MTT and EdU experiments showed that the C-terminal homology domain (CHD) and N-terminal homology domain (NHD) of Lr-AFF3 promoted cell proliferation. In summary, our research will not only provide new insights into the origin and evolution of the AFF gene family in different species, but also provide new clues for the functions of Lr_AFF3.

Coastal Eukaryotic Plankton Diversity of the Southern Adriatic as Revealed by Metabarcoding

Plankton studies serve as a basis for marine ecosystem research, but knowledge of marine plankton is still incomplete due to its extreme taxonomic and functional complexity. The application of metabarcoding is very valuable for the characterisation of the plankton community. The plankton community of the Southern Adriatic is subject to strong environmental fluctuations and changes, which underlines the need for frequent, reliable and comprehensive characterisation of the plankton. The aim of this study was to determine the taxonomic composition and seasonal distribution of eukaryotic plankton in the Southern Adriatic. Plankton samples were collected monthly for one year at the coastal station of the Southern Adriatic and metabarcoding was used for taxonomic identification. The results showed a high taxonomic diversity and dynamic seasonal distribution patterns for both the protist and metazoan plankton communities. Metabarcoding revealed both the core, year-round plankton community and previously unrecorded plankton organisms in the Southern Adriatic. The results provide for the first time a comprehensive overview of the plankton community in this area by metabarcoding. The identified seasonal patterns of plankton genera and species in the Southern Adriatic will contribute to the understanding of plankton interactions and future changes in community diversity characterisation.

Distribution and genetic diversity of cobitid species in Iran (Teleostei: Cobitidae)

Several species of Cobitis have been reported within Iran, but only four are recognized as valid. The geographical distribution and genetic diversity of these species are not well-known. Two new populations of C. saniae and C. avicennae were reported herein based on their morphological and phylogenetic characters from the Mahabad River, a tributary of the Urmia Lake basin, and the Razavar River, a tributary of the Karkheh drainage, respectively. The genetic diversity and genetic structure of populations of C. saniae, C. avicennae, and C. faridpaki were analysed using the DNA sequences of the mitochondrial COI gene. COI sequences from various watersheds in Iran, Azerbaijan, and Georgia were used. A moderate to high level haplotype diversity and low nucleotide diversity were found in most of the populations of all three species. The AMOVA test and pairwise FST comparison revealed significant genetic structure and genetic distance between the Urmia Lake basin and other C. saniae populations. The results highlight the importance of conserving these species and their habitats, particularly in the Urmia Lake basin, where significant genetic differentiation was observed.

Unveiling Novel Kunitz- and Waprin-Type Toxins in the Micrurus mipartitus Coral Snake Venom Gland: An In Silico Transcriptome Analysis

Kunitz-type peptide expression has been described in the venom of snakes of the Viperidae, Elapidae and Colubridae families. This work aimed to identify these peptides in the venom gland transcriptome of the coral snake Micrurus mipartitus. Transcriptomic analysis revealed a high diversity of venom-associated Kunitz serine protease inhibitor proteins (KSPIs). A total of eight copies of KSPIs were predicted and grouped into four distinctive types, including short KSPI, long KSPI, Kunitz–Waprin (Ku-WAP) proteins, and a multi-domain Kunitz-type protein. From these, one short KSPI showed high identity with Micrurus tener and Austrelaps superbus. The long KSPI group exhibited similarity within the Micrurus genus and showed homology with various elapid snakes and even with the colubrid Pantherophis guttatus. A third group suggested the presence of Kunitz domains in addition to a whey-acidic-protein-type four-disulfide core domain. Finally, the fourth group corresponded to a transcript copy with a putative 511 amino acid protein, formerly annotated as KSPI, which UniProt classified as SPINT1. In conclusion, this study showed the diversity of Kunitz-type proteins expressed in the venom gland transcriptome of M. mipartitus.

Associations of Dietary Diversity Trajectories with Frailty among Chinese Older Adults: A Latent Class Trajectory Analysis Based on a CLHLS Cohort

Background: High dietary diversity has been found to be associated with frailty. However, the trajectory of dietary diversity intake in relation to frailty is unclear. Methods: Using the latent class trajectory modeling approach, we identified distinctive dietary variety trajectory groups among 2017 participants based on the Chinese Longitudinal Healthy Longevity Survey acquired at four time points within a 10-year period. Frailty status was assessed using a frailty index comprising 37 health deficits. Dietary diversity was quantified using the dietary variety score (DVS), based on food category consumption frequency. Logistic regression analyses were employed to explore the association between DVS change trajectories and frailty. Results: This study identified two distinct DVS trajectories: “Moderate-Slow decline-Slow growth”, encompassing 810 (40.16%) individuals, and “Moderate-Slow growth-Accelerated decline”, including 1207 (59.84%) individuals. After adjusting for covariates, the odds ratio for DVS in the “Moderate-Slow decline-Slow growth” group was 1.326 (95% confidence interval: 1.075–1.636) compared to the “Moderate-Slow growth-Accelerated decline” group. The “Moderate-Slow decline-Slow growth” trajectory continued to decrease and was maintained at a low level in the early stages of aging. Conclusion: Sustaining a high dietary diversity trajectory over time, particularly in the early stages of aging, could potentially decrease the risk of frailty among older Chinese adults.

Hidden diversity in eastern North America: The genus Ligidium (Oniscidea, Ligiidae) in the southern Appalachian Mountains

AbstractThe terrestrial isopod genus Ligidium includes 58 species from Europe, Asia, and North America. In Eastern North America four species are recognized: L. floridanum and L. mucronatum, known just from their type localities in Florida and Louisiana respectively, L. blueridgensis, endemic to the southern Appalachians, and L. elrodii, widespread from Georgia to Ontario. The genus shows a marked morphological conservatism, and species are differentiated mostly by small morphological differences; it is not always easy to determine if such variability represents inter‐ or intraspecific variation. Here, we explore the diversity of Ligidium from the southern Appalachian Mountains, exploring the congruence of morphologically defined groups with multilocus phylogenetic reconstructions and molecular species delimitation methods. We have studied a total of 130 specimens from 37 localities, mostly from the southern Appalachians, and analysed mtDNA (Cox1) and nuclear (28S, NaK) sequences. Morphologically, we recognized eight morphotypes, most of them assignable to current concepts of L. elrodii and L. blueridgensis. Phylogenetic analyses supported the evolutionary independence of all morphotypes, and suggest the existence of 8–9 species, including limited cryptic diversity. Single‐locus delimitation analyses based on mtDNA data suggest the existence of a much higher number of species than the multilocus analyses. The estimated age of the ancestors of sampled lineages indicates a long presence of the genus in eastern North America and old speciation events through the Miocene. Our results indicate a higher diversity than previously thought among the Ligidium populations present in the southern Appalachian Mountains, with several species to be described.

Molecular diagnosis and characterization of Anaplasma marginale and Ehrlichia ruminantium infecting beef cattle of Maputo Province, Mozambique

BackgroundMembers of the Anaplasmataceae family, such as the Anaplasma and Ehrlichia species, cause economic losses and public health risks. However, the exact economic impact has not been comprehensively assessed in Mozambique due to limited data available on its basic epidemiology. Therefore, we investigated the molecular occurrence and identity of Anaplasma and Ehrlichia spp. infecting beef cattle in Maputo province, Mozambique.MethodsA total of 200 whole blood samples were collected from apparently healthy beef cattle. Whole blood DNA was extracted and tested for presence of Anaplasma spp. and Ehrlichia ruminantium DNA through amplification of the 16S rRNA and map1 genes. Positive samples to Anaplasma spp. were subject to PCR assay targeting the A. marginale-msp5 gene. Amplicons obtained were purified, sequenced and subject to phylogenetic analyses.ResultsAnaplasma spp., A. marginale and E. ruminantium were detected in 153 (76.5%), 142 (71%) and 19 (9.5%) of all the samples analyzed, respectively. On this same sample group, 19 (9.5%) were co-infected with A. marginale and E. ruminantium. The 16S rRNA sequences of Anaplasma spp. obtained were phylogenetically related to A. marginale, A. centrale and A. platys. Phylogenetic analysis revealed that A. marginale-msp5 nucleotide sequences were grouped with sequences from Asia, Africa and Latin America, whereas E. ruminantium-map1 DNA nucleotide sequences were positioned in multiple clusters.ConclusionCattle in Maputo Province are reservoirs for multiple Anaplasma species. A high positivity rate of infection by A. marginale was observed, as well as high genetic diversity of E. ruminantium. Furthermore, five new genotypes of E. ruminantium-map1 were identified.

Pepper mild mottle virus intended for use as a process indicator for drinking water treatment: Present forms and quantitative relations to norovirus and rotavirus in surface water

Pepper mild mottle virus (PMMoV) has been proposed as a potential indicator of human enteric viruses in environmental water and for viral removal during drinking water treatment. To investigate the occurrence and present forms of PMMoV and quantitative relations to norovirus GII and rotavirus A (RVA) in surface waters, 147 source water samples were collected from 21 drinking water treatment plants (DWTPs) in Japan between January 2018 and January 2021, and the concentrations of viruses in suspended and dissolved fractions were measured using real-time RT-PCR. PMMoV was detected in 81–100 % of samples in each sample month and observed concentrations ranged from 3.0 to 7.0 log10 copies/L. The concentrations of PMMoV were higher in dissolved fraction compared to suspended fractions, while different partitioning was observed for NoV GII depending on seasons. The concentrations of PMMoV were basically higher than those of norovirus GII (1.9−5.3 log10 copies/L) and RVA (1.9−6.6 log10 copies/L), while in 18 samples, RVA presented higher concentrations than PMMoV. Partial regions of VP7, VP4, and VP6 of the RVA in the 18 samples were amplified using nested PCR, and the genotypes were determined using an amplicon-based next-generation sequencing approach. We found that these source water samples included not only human RVA but also various animal RVA and high genetic diversity due to the existence of animal RVA was associated with a higher RVA concentration than PMMoV. Our findings suggest that PMMoV can be used as an indicator of norovirus GII and human RVA in drinking water sources and that the indicator performance should be evaluated by comparing to zoonotic viruses as well as human viruses.

Phenology, Yield and Nut Traits Evaluation of Twelve European Hazelnut Cultivars Grown in Central Italy

European hazelnut (Corylus avellana L.) cultivation has grown worldwide in recent years, even though the world’s production is still fulfilled by a few dozen cultivars well adapted to the local environments of their selection. After Turkey, Italy is the second largest producer of hazelnuts, and the province of Viterbo, in central Italy, is recognized as one of the most suitable districts for hazelnut cultivation. The production in this area relies almost entirely on local cultivar ‘Tonda Gentile Romana’, whereas cultivar ‘Nocchione’ is used as the main pollinizer. More recently, cultivar ‘Tonda di Giffoni’ has been introduced in new local plantations. Cultivation of many cultivars in different areas is of fundamental importance to test their adaptability to different environmental conditions, a need currently accentuated by ongoing climate change. With this aim, a European hazelnut collection field was established in 2000 in Caprarola municipality (Viterbo province), where plants of twelve hazelnut cultivars were observed over four growing seasons for their phenological, agronomic and nut traits. The cultivars studied, namely ‘Barcelona’, ‘Camponica’, ‘Ennis’, ‘Merveille de Bollwiller’, ‘Negret’, ‘Nocchione’, ‘Riccia di Talanico’, ‘San Giovanni’, ‘Tombul’, ‘Tonda di Giffoni’, ‘Tonda Gentile’ and ‘Tonda Gentile Romana’, showed a high diversity in their phenological behaviour, yield efficiency and nut and kernel traits. Cultivars ‘Negret’, ‘Tombul’ and ‘Tonda Gentile’, with poor yields over the years of research, do not seem suitable to be cultivated as main cultivars in the studied environment, contrary to ‘Camponica’ and ‘San Giovanni’, which produced abundantly, reaching a total of almost 30 and 25 kg plant—1 of in–shell hazelnuts, respectively. Cultivars ‘Tonda Gentile Romana’ and ‘Nocchione’ confirmed their yield consistency, whereas ‘Ennis’, ‘Barcelona’ and ‘Tombul’ seem suitable to be introduced as pollinizers thanks to their male blooming overlapping with the female blooming of the main cultivar ‘Tonda Gentile Romana’. Cultivar ‘Tonda di Giffoni’ did not perform well in the studied environment, despite being recognized as one of the highest-yield cultivars.

High Diversity of Long Terminal Repeat Retrotransposons in Compact Vertebrate Genomes: Insights from Genomes of Tetraodontiformes

This study aimed to investigate the evolutionary profile (including diversity, activity, and abundance) of retrotransposons (RTNs) with long terminal repeats (LTRs) in ten species of Tetraodontiformes. These species, Arothron firmamentum, Lagocephalus sceleratus, Pao palembangensis, Takifugu bimaculatus, Takifugu flavidus, Takifugu ocellatus, Takifugu rubripes, Tetraodon nigroviridis, Mola mola, and Thamnaconus septentrionalis, are known for having the smallest genomes among vertebrates. Data mining revealed a high diversity and wide distribution of LTR retrotransposons (LTR-RTNs) in these compact vertebrate genomes, with varying abundances among species. A total of 819 full-length LTR-RTN sequences were identified across these genomes, categorized into nine families belonging to four different superfamilies: ERV (Orthoretrovirinae and Epsilon retrovirus), Copia, BEL-PAO, and Gypsy (Gmr, Mag, V-clade, CsRN1, and Barthez). The Gypsy superfamily exhibited the highest diversity. LTR family distribution varied among species, with Takifugu bimaculatus, Takifugu flavidus, Takifugu ocellatus, and Takifugu rubripes having the highest richness of LTR families and sequences. Additionally, evidence of recent invasions was observed in specific tetraodontiform genomes, suggesting potential transposition activity. This study provides insights into the evolution of LTR retrotransposons in Tetraodontiformes, enhancing our understanding of their impact on the structure and evolution of host genomes.

Swarm and UNOISE outperform DADA2 and Deblur for denoising high-diversity marine seafloor samples

Abstract The performance of sequence variant resolution analytic tools for metabarcoding has not yet been adequately benchmarked for high-diversity environmental samples. We therefore evaluated the sequence variant tools DADA2, Deblur, Swarm and UNOISE, using high-diversity seafloor samples, resulting in comparisons of 1800 sequence variant tables. The evaluation was based on 30 sediment grab samples, for which three replica samples were collected. Each replica sample was extracted using five common DNA extraction kits, resulting in 450 DNA extracts which were 16S rRNA gene sequenced (V3-V4), using Illumina. Assessments included variation across replica samples, extraction kits and denoising methods, in addition to applying prior knowledge about alpha diversity correlations towards the cosmopolitan marine archaeon Nitrosopumilus with high diversity, and the sulfide oxidizing Sulfurovum with low diversity. DADA2 displayed the highest variance between replicates (Manhattan distance 1.14), while Swarm showed the lowest variance (Manhattan distance 0.93). For the analysis based on prior biological knowledge, UNOISE displayed the highest alpha diversity (Simpson’s D) correlation towards Nitrosopumilus (Spearman rho = 0.85), while DADA2 showed the lowest (Spearman rho = 0.10). Deblur completely eliminated Nitrosopumilus from the dataset. For Sulfurovum, on the other hand, all the methods showed comparable results. In conclusion, our evaluations show that Swarm and UNOISE performed better than DADA2 and Deblur for high-diversity seafloor samples.

The rhizosphere of a drought-tolerant plant species in Morocco: A refuge of high microbial diversity with no taxon preference.

Arid and semi-arid areas are facing increasingly severe water deficits that are being intensified by global climate changes. Microbes associated with plants native to arid regions provide valuable benefits to plants, especially in water-stressed environments. In this study, we used 16S rDNA metabarcoding analysis to examine the bacterial communities in the bulk soil, rhizosphere and root endosphere of the plant Malva sylvestris L. in Morocco, along a gradient of precipitation. We found that the rhizosphere of M. sylvestris did not show significant differences in beta-diversity compared to bulk soil, although, it did display an increased degree of alpha-diversity. The endosphere was largely dominated by the genus Rhizobium and displayed remarkable variation between plants, which could not be attributed to any of the variables observed in this study. Overall, the effects of precipitation level were relatively weak, which may be related to the intense drought in Morocco at the time of sampling. The dominance of Rhizobium in a non-leguminous plant is particularly noteworthy and may permit the utilization of this bacterial taxon to augment drought tolerance; additionally, the absence of any notable selection of the rhizosphere of M. sylvestris suggests that it is not significatively affecting its soil environment.

What is still at stake in the Gran Chaco? Social-ecological impacts of alternative land-system futures in a global deforestation hotspot

Commodity agriculture continues to spread into tropical dry forests globally, eroding their social-ecological integrity. Understanding where deforestation frontiers expand, and which impacts this process triggers, is thus important for sustainability planning. We reconstructed past land-system change (1985–2015) and simulated alternative land-system futures (2015–2045) for the Gran Chaco, a 1.1 million km2 global deforestation hotspot with high biological and cultural diversity. We co-developed nine plausible future land-system scenarios, consisting of three contrasting policy narratives (Agribusiness, Ecomodernism, and Integration) and three agricultural expansion rates (high, medium, and low). We assessed the social-ecological impacts of our scenarios by comparing them with current biodiversity, carbon density, and areas used by forest-dependent people. Our analyses revealed four major insights. First, intensified agriculture and mosaics of agriculture and remaining natural vegetation have replaced large swaths of woodland since 1985. Second, simulated land-system futures until 2045 revealed potential hotspots of natural vegetation loss (e.g. western and southern Argentinian Chaco, western Paraguayan Chaco), both due to the continued expansion of existing agricultural frontiers and the emergence of new ones. Third, the strongest social-ecological impacts were consistently connected to the Agribusiness scenarios, while impacts were lower for the Ecomodernism and Integration scenarios. Scenarios based on our Integration narrative led to lower social impacts, while Ecomodernism had lower ecological impacts. Fourth, comparing recent land change with our simulations showed that 10% of the Chaco is on a pathway consistent with our Agribusiness narrative, associated with adverse social-ecological impacts. Our results highlight that much is still at stake in the Chaco. Stricter land-use and conservation planning are urgently needed to avoid adverse social-ecological outcomes, and our results charting the option space of plausible land-system futures can support such planning.

Unveiling Social Dynamics in People's Perception of Raptors to Guide Effective Conservation Strategies

Ethnoscientific approaches offer valuable tools for exploring human–nature relationships, making them useful for developing effective conservation strategies. Raptors, which are birds of prey, face significant conservation threats worldwide, with human persecution being a leading factor in their population decline. Urgent conservation strategies are needed, particularly in regions of high raptor diversity like the tropical Andes. In this study, we employed semistructured questionnaires and logistic models to investigate how demographic factors, economic activity, and traditional knowledge shape people's perceptions of raptors in rural communities of the Ecuadorian Andes. These communities have historically experienced poverty and inequality, and our approach takes into account their local realities to provide conservation recommendations. Our findings reveal that traditional ecological knowledge provides a broad understanding of human–raptor relations, and that raptors are viewed as both providers of ecosystem services and disservices. Additionally, social demographics, such as gender and educational level, can influence people's perception of raptors. Based on these results, we can promote conservation actions from a local to global level. Ethnoecological approaches offer diverse conservation opportunities that can vary based on different local contexts. In addition to conventional measures such as environmental education programs, poultry management, and landscape preservation, it is essential to consider the political ecology of specific sites, particularly in regions of the Global South where poverty and inequality are closely intertwined with social and environmental injustices. As such, policy making to alleviate poverty and inequality in rural communities in Ecuador and other Andean countries; and science decolonization to make conservation more inclusive are crucial for human well-being and successful and lasting conservation actions for raptors and biodiversity.